Transcript: NCK1-DT:23

Basic information

LNCipedia transcript ID: NCK1-DT:23 
LNCipedia gene ID: NCK1-DT
RefSeq ID: NR_110176
Location (hg19): chr3:136560818-136580905
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1102 bp
Exons: 3
Sources: Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: NR_110176; NR_110176.1
Alternative gene names: SLC35G2-AS1; NCK1-AS1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -68.9213 non-coding 
CPAT coding probability 1.41% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
NCK1-DT:23 no no no no

Available literature

  1. Li (2018), LncRNA NCK1-AS1 promotes proliferation and induces cell cycle progression by crosstalk NCK1-AS1/miR-6857/CDK1 pathway., Cell Death Dis


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-STAG1-1:4
4.0 NCK1-AS1:4
4.1 NCK1-AS1:4
5.0 NCK1-AS1:4
5.1 NCK1-DT:5
5.2 NCK1-DT:23