Transcript: NCK1-DT:26

Basic information

LNCipedia transcript ID: NCK1-DT:26 
HGNC Gene Symbol: NCK1-DT    
HGNC Full Gene Name: NCK1 divergent transcript
Ensembl Gene ID: ENSG00000239213
Ensembl Transcript ID: ENST00000474250
Location (hg19): chr3:136561033-136580891
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 827 bp
Exons: 4
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000474250.1; RP11-85F14.5-002; OTTHUMT00000357333.1; NONHSAT092289; ENST00000474250.5
Alternative gene names: ENSG00000239213.1; RP11-85F14.5; OTTHUMG00000159786.2; ENSG00000239213.5; NCK1-AS1; SLC35G2-AS1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -68.9213 non-coding 
CPAT coding probability 1.43% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
NCK1-DT:26 no no no no

Available literature

  1. Li (2018), LncRNA NCK1-AS1 promotes proliferation and induces cell cycle progression by crosstalk NCK1-AS1/miR-6857/CDK1 pathway., Cell Death Dis


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-STAG1-1:2
4.0 NCK1-AS1:7
4.1 NCK1-AS1:7
5.0 NCK1-AS1:7
5.1 NCK1-DT:8
5.2 NCK1-DT:26