Transcript: NCK1-DT:28

Basic information

LNCipedia transcript ID: NCK1-DT:28 
LNCipedia gene ID: NCK1-DT
Location (hg19): chr3:136554947-136580861
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 6524 bp
Exons: 3
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000239213.1|HBMT00001012391.1
Alternative gene names: SLC35G2-AS1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 18.1865 non-coding 
CPAT coding probability 0.15% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
NCK1-DT:28 no no no no

Available literature

  1. Li (2018), LncRNA NCK1-AS1 promotes proliferation and induces cell cycle progression by crosstalk NCK1-AS1/miR-6857/CDK1 pathway., Cell Death Dis


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 NCK1-AS1:11
5.0 NCK1-AS1:11
5.1 NCK1-DT:10
5.2 NCK1-DT:28