Transcript: NCK1-DT:36

Basic information

LNCipedia transcript ID: NCK1-DT:36 
LNCipedia gene ID: NCK1-DT
Location (hg19): chr3:136556189-136559330
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 3142 bp
Exons: 1
Sources: Sun and Gadad et al., 2015
Alternative transcript names: LncRNA1018:1
Alternative gene names: SLC35G2-AS1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -104.7733 non-coding 
CPAT coding probability 0.30% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
NCK1-DT:36 no no no no

Available literature

  1. Li (2018), LncRNA NCK1-AS1 promotes proliferation and induces cell cycle progression by crosstalk NCK1-AS1/miR-6857/CDK1 pathway., Cell Death Dis


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 lnc-STAG1-6:2
4.1 NCK1-AS1:17
5.0 NCK1-AS1:17
5.1 NCK1-DT:18
5.2 NCK1-DT:36