Transcript: NCK1-DT:37

Basic information

LNCipedia transcript ID: NCK1-DT:37 
LNCipedia gene ID: NCK1-DT
Ensembl Gene ID: ENSG00000273486
Ensembl Transcript ID: ENST00000609553
Location (hg19): chr3:136556180-136557863
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1684 bp
Exons: 1
Sources: Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000609553.1
Alternative gene names: ENSG00000273486.1; RP11-731C17.2; SLC35G2-AS1; AC096992.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -104.7733 non-coding 
CPAT coding probability 0.32% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
NCK1-DT:37 no no no no

Available literature

  1. Li (2018), LncRNA NCK1-AS1 promotes proliferation and induces cell cycle progression by crosstalk NCK1-AS1/miR-6857/CDK1 pathway., Cell Death Dis


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-STAG1-6:1
4.0 lnc-STAG1-6:1
4.1 NCK1-AS1:18
5.0 NCK1-AS1:18
5.1 NCK1-DT:19
5.2 NCK1-DT:37