Transcript: NUTM2A-AS1:50

Basic information

LNCipedia transcript ID: NUTM2A-AS1:50 
LNCipedia gene ID: NUTM2A-AS1
Location (hg19): chr10:89038179-89092390
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1324 bp
Exons: 9
Sources: Nielsen et al.,2014
Alternative transcript names: l_344_chr10:89038178-89092107_ovary
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -19.6497 non-coding 
CPAT coding probability 0.39% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
NUTM2A-AS1:50 no no no no

Available literature

  1. Joo (2014), Role of Pnn in alternative splicing of a specific subset of lncRNAs of the corneal epithelium., Mol. Vis.
  2. Cao (2013), Analysis of long non-coding RNA expression profiles in gastric cancer., World J. Gastroenterol.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-GLUD1-9:1
4.0 lnc-GLUD1-9:1
4.1 NUTM2A-AS1:50
5.0 NUTM2A-AS1:50
5.1 NUTM2A-AS1:50
5.2 NUTM2A-AS1:50