Transcript: NUTM2B-AS1:58

Basic information

LNCipedia transcript ID: NUTM2B-AS1:58 
LNCipedia gene ID: NUTM2B-AS1
Ensembl Gene ID: ENSG00000226676
Ensembl Transcript ID: ENST00000421256
Location (hg19): chr10:81390511-81391942
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 385 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00018003; ENST00000421256; ENST00000421256.1; RP11-589B3.6-002; OTTHUMT00000048971.1; NONHSAT015134
Alternative gene names: XLOC_008867; linc-SFTPA2-1; ENSG00000226676; RP11-589B3.6; ENSG00000226676.1; OTTHUMG00000018570.1; BX248123.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -19.1108 non-coding 
CPAT coding probability 1.45% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
NUTM2B-AS1:58 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-SFTPA2-1:2
3.1 lnc-SFTPA2-2:2
4.0 lnc-SFTPA2-2:2
4.1 lnc-SFTPA2-2:2
5.0 lnc-SFTPA2-2:2
5.1 NUTM2B-AS1:56
5.2 NUTM2B-AS1:58