Transcript: PDYN-AS1:16

Basic information

LNCipedia transcript ID: PDYN-AS1:16 
HGNC Gene Symbol: PDYN-AS1    
HGNC Full Gene Name: PDYN antisense RNA 1
Ensembl Gene ID: ENSG00000233896
Ensembl Transcript ID: ENST00000446562
Location (hg19): chr20:1927892-1988163
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1802 bp
Exons: 4
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000446562; ENST00000446562.1; RP4-684O24.5-001; OTTHUMT00000251764.1; NONHSAT078147
Alternative gene names: ENSG00000233896; RP4-684O24.5; ENSG00000233896.1; OTTHUMG00000129569.1; PDYN-AS1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -116.2784 non-coding 
CPAT coding probability 13.56% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
PDYN-AS1:16 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-SIRPA-2:1
3.1 lnc-SIRPA-2:1
4.0 lnc-SIRPA-2:1
4.1 lnc-SIRPA-2:1
5.0 lnc-SIRPA-2:1
5.1 PDYN-AS1:9
5.2 PDYN-AS1:16