Transcript: PRKAR2A-AS1:5

Basic information

LNCipedia transcript ID: PRKAR2A-AS1:5 
HGNC Gene Symbol: PRKAR2A-AS1    
HGNC Full Gene Name: PRKAR2A antisense RNA 1
Ensembl Gene ID: ENSG00000224424
Ensembl Transcript ID: ENST00000412171
Location (hg19): chr3:48885370-48886887
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 940 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000412171.2; PRKAR2A-AS1-002; OTTHUMT00000345241.1
Alternative gene names: ENSG00000224424.6; PRKAR2A-AS1; OTTHUMG00000156671.2; ENSG00000224424.7;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -42.6666 non-coding 
CPAT coding probability 4.10% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
PRKAR2A-AS1:5 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-ARIH2-1:3
4.0 PRKAR2A-AS1:5
4.1 PRKAR2A-AS1:5
5.0 PRKAR2A-AS1:5
5.1 PRKAR2A-AS1:5
5.2 PRKAR2A-AS1:5