Transcript: SAMMSON:2

Basic information

LNCipedia transcript ID: SAMMSON:2 
LNCipedia gene ID: SAMMSON
Location (hg19): chr3:70048895-70064469
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2044 bp
Exons: 4
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016
Alternative transcript names: ENST00000483525; ENST00000483525.1; RP11-460N16.1-001; OTTHUMT00000352919.1; NONHSAT090373
Alternative gene names: ENSG00000240405; RP11-460N16.1; ENSG00000240405.1; OTTHUMG00000159017.1; ENSG00000240405.5; LINC01212; ; SAMMSON


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 15.2547 non-coding 
CPAT coding probability 20.87% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
SAMMSON:2 no no no no

Available literature

  1. Leucci (2016), Melanoma addiction to the long non-coding RNA SAMMSON., Nature


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-MITF-1:2
3.1 lnc-MITF-1:3
4.0 SAMMSON:2
4.1 SAMMSON:2
5.0 SAMMSON:2
5.1 SAMMSON:2
5.2 SAMMSON:2