Transcript: SATB1-AS1:16

Basic information

LNCipedia transcript ID: SATB1-AS1:16 
LNCipedia gene ID: SATB1-AS1
Location (hg19): chr3:18507447-18568819
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 540 bp
Exons: 4
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: ENST00000456253; ENST00000456253.1; AC144521.1-003; OTTHUMT00000339552.1; NONHSAT088570
Alternative gene names: ENSG00000228956; AC144521.1; ENSG00000228956.2; OTTHUMG00000155346.2;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -99.9014 non-coding 
CPAT coding probability 0.32% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
SATB1-AS1:16 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-KCNH8-3:3
3.1 lnc-KCNH8-3:4
4.0 SATB1-AS1:16
4.1 SATB1-AS1:16
5.0 SATB1-AS1:16
5.1 SATB1-AS1:16
5.2 SATB1-AS1:16