Transcript: SATB1-AS1:8

Basic information

LNCipedia transcript ID: SATB1-AS1:8 
LNCipedia gene ID: SATB1-AS1
Location (hg19): chr3:18504172-18505831
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 919 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: ENST00000438418.2; AC144521.1-002; OTTHUMT00000339551.2; NONHSAT088568
Alternative gene names: ENSG00000228956.2; AC144521.1; OTTHUMG00000155346.2;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -125.9613 non-coding 
CPAT coding probability 0.04% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
SATB1-AS1:8 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-KCNH8-3:2
4.0 SATB1-AS1:8
4.1 SATB1-AS1:8
5.0 SATB1-AS1:8
5.1 SATB1-AS1:8
5.2 SATB1-AS1:8