Transcript: SATB1-AS1:88

Basic information

LNCipedia transcript ID: SATB1-AS1:88 
HGNC Gene Symbol: SATB1-AS1    
HGNC Full Gene Name: SATB1 antisense RNA 1
Ensembl Gene ID: ENSG00000228956
Ensembl Transcript ID: ENST00000425799
Location (hg19): chr3:18735379-18959184
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 611 bp
Exons: 8
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00005496; ENST00000425799; ENST00000425799.2; AC105750.1-002; OTTHUMT00000339554.2; NONHSAT088590; ENST00000425799.6
Alternative gene names: XLOC_002593; linc-KCNH8-1; ENSG00000233386; AC105750.1; ENSG00000233386.2; OTTHUMG00000155347.2; ENSG00000228956.4; AC144521.1; ENSG00000228956.8; SATB1-AS1;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 1 coding 
Peptide Confidence Reading frame
DCCASNQR 100% sense-1
Lee translation initiation sites 0 non-coding 
PhyloCSF score -36.0042 non-coding 
CPAT coding probability 2.89% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
SATB1-AS1:88 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-KCNH8-1:1
3.1 lnc-KCNH8-1:1
4.0 SATB1-AS1:88
4.1 SATB1-AS1:88
5.0 SATB1-AS1:88
5.1 SATB1-AS1:88
5.2 SATB1-AS1:88