Transcript: SATB1-AS1:9

Basic information

LNCipedia transcript ID: SATB1-AS1:9 
LNCipedia gene ID: SATB1-AS1
Location (hg19): chr3:18504303-18507501
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 835 bp
Exons: 3
Sources: Ensembl release 75 - Feb 2014
Alternative transcript names: ENST00000438418.3
Alternative gene names: ENSG00000228956.4; AC144521.1;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -140.1136 non-coding 
CPAT coding probability 0.04% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
SATB1-AS1:9 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-KCNH8-1:7
4.0 SATB1-AS1:9
4.1 SATB1-AS1:9
5.0 SATB1-AS1:9
5.1 SATB1-AS1:9
5.2 SATB1-AS1:9