Transcript: SEC23A-AS1:12

Basic information

LNCipedia transcript ID: SEC23A-AS1:12 
HGNC Gene Symbol: SEC23A-AS1    
HGNC Full Gene Name: SEC23A antisense RNA 1
Ensembl Gene ID: ENSG00000258651
Ensembl Transcript ID: ENST00000557350
Location (hg19): chr14:39572344-39573016
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 500 bp
Exons: 2
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000557350; ENST00000557350.1; RP11-545M17.1-001; OTTHUMT00000410200.1; NONHSAT036511
Alternative gene names: ENSG00000258651; RP11-545M17.1; ENSG00000258651.1; OTTHUMG00000170749.1; SEC23A-AS1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -6.0265 non-coding 
CPAT coding probability 1.01% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
SEC23A-AS1:12 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-GEMIN2-1:1
3.1 lnc-GEMIN2-1:1
4.0 lnc-GEMIN2-1:1
4.1 lnc-GEMIN2-1:1
5.0 lnc-GEMIN2-1:1
5.1 SEC23A-AS1:4
5.2 SEC23A-AS1:12