Transcript: SNHG16:10

Basic information

LNCipedia transcript ID: SNHG16:10 
HGNC Gene Symbol: SNHG16    
HGNC Full Gene Name: small nucleolar RNA host gene 16
Ensembl Gene ID: ENSG00000163597
Ensembl Transcript ID: ENST00000493536
Location (hg19): chr17:74553852-74561425
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 2424 bp
Exons: 3
Sources: Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000493536.1; ENST00000493536.5
Alternative gene names: ENSG00000163597.10; SNHG16; ENSG00000163597.14; ncRAN; Nbla12061; Nbla10727


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 4 non-coding 
PhyloCSF score 5.764 non-coding 
CPAT coding probability 1.28% non-coding 
Bazzini small ORFs 2 coding 
seqAAMATPVGVEHGEQSQAFSDDGAVSLSFQSRKRIL
orfFrame10.83696567
covF1Prop0.387096774
covF1Prop0.228070175
orfFrame6.890324548
seqAAMSLMLAPSDARWDQHSPASAANCSSKVIAMRSLGFIFKGMKQLRLFWKTFWQLVKLEYN

In stringent set: no

Locus conservation

Locus conservation?
SNHG16:10 no no no no

Available literature

  1. Qi (2015), Down-regulation of ncRAN, a long non-coding RNA, contributes to colorectal cancer cell migration and invasion and predicts poor overall survival for colorectal cancer patients., Mol. Carcinog.
  2. Hart (2014), MYC regulates the non-coding transcriptome., Oncotarget
  3. Zhu (2011), ncRAN, a newly identified long noncoding RNA, enhances human bladder tumor growth, invasion, and survival., Urology
  4. Yu (2009), High expression of ncRAN, a novel non-coding RNA mapped to chromosome 17q25.1, is associated with poor prognosis in neuroblastoma., Int. J. Oncol.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-AC090699.1.1-1:10
4.0 SNHG16:10
4.1 SNHG16:10
5.0 SNHG16:10
5.1 SNHG16:10
5.2 SNHG16:10