Transcript: SNHG16:12

Basic information

LNCipedia transcript ID: SNHG16:12 
LNCipedia gene ID: SNHG16
Location (hg19): chr17:74553857-74561361
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1964 bp
Exons: 5
Sources: NONCODE v4
Alternative transcript names: NONHSAT056047
Alternative gene names: ncRAN; Nbla12061; Nbla10727


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 4 non-coding 
PhyloCSF score 5.764 non-coding 
CPAT coding probability 1.31% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
SNHG16:12 no no no no

Available literature

  1. Qi (2015), Down-regulation of ncRAN, a long non-coding RNA, contributes to colorectal cancer cell migration and invasion and predicts poor overall survival for colorectal cancer patients., Mol. Carcinog.
  2. Hart (2014), MYC regulates the non-coding transcriptome., Oncotarget
  3. Zhu (2011), ncRAN, a newly identified long noncoding RNA, enhances human bladder tumor growth, invasion, and survival., Urology
  4. Yu (2009), High expression of ncRAN, a novel non-coding RNA mapped to chromosome 17q25.1, is associated with poor prognosis in neuroblastoma., Int. J. Oncol.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-AC090699.1.1-1:12
4.0 SNHG16:12
4.1 SNHG16:12
5.0 SNHG16:12
5.1 SNHG16:12
5.2 SNHG16:12