Transcript: SNHG4:7

Basic information

LNCipedia transcript ID: SNHG4:7 
LNCipedia gene ID: SNHG4
Ensembl Gene ID: ENSG00000281398
Ensembl Transcript ID: ENST00000507197
Location (hg19): chr5:138609807-138618933
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 865 bp
Exons: 6
Sources: NONCODE v4; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: NONHSAT104078; ENST00000507197.5
Alternative gene names: ENSG00000281398.2; SNHG4; U19H; NCRNA00059; ENSG00000281398.3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -3.8773 non-coding 
CPAT coding probability 1.14% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
SNHG4:7 no no no no

Available literature

  1. Ellinger (2015), The long non-coding RNA lnc-ZNF180-2 is a prognostic biomarker in patients with clear cell renal cell carcinoma., Am J Cancer Res
  2. Kraus (2015), Identification of Stably Expressed lncRNAs as Valid Endogenous Controls for Profiling of Human Glioma., J Cancer
  3. Shen (2015), Exploration of Deregulated Long Non-Coding RNAs in Association with Hepatocarcinogenesis and Survival., Cancers (Basel)
  4. Zhang (2015), Cancer Specific Long Noncoding RNAs Show Differential Expression Patterns and Competing Endogenous RNA Potential in Hepatocellular Carcinoma., PLoS ONE
  5. Takahashi (2014), Extracellular vesicle-mediated transfer of long non-coding RNA ROR modulates chemosensitivity in human hepatocellular cancer., FEBS Open Bio
  6. Clark (2012), Genome-wide analysis of long noncoding RNA stability., Genome Res.
  7. Friedel (2009), Conserved principles of mammalian transcriptional regulation revealed by RNA half-life., Nucleic Acids Res.
  8. Bortolin (1998), Human U19 intron-encoded snoRNA is processed from a long primary transcript that possesses little potential for protein coding., RNA


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-MATR3-2:7
4.0 SNHG4:7
4.1 SNHG4:7
5.0 SNHG4:7
5.1 SNHG4:7
5.2 SNHG4:7