Transcript: SNHG6:5

Basic information

LNCipedia transcript ID: SNHG6:5 
LNCipedia gene ID: SNHG6
Location (hg19): chr8:67834165-67837777
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 291 bp
Exons: 2
Sources: NONCODE v4
Alternative transcript names: NONHSAT127050
Alternative gene names: U87HG; HBII-276HG; NCRNA00058


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 2 non-coding 
PhyloCSF score -202.2061 non-coding 
CPAT coding probability 4.23% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
SNHG6:5 no no no no

Available literature

  1. Yan (2017), LncRNA SNHG6 is Associated with Poor Prognosis of Gastric Cancer and Promotes Cell Proliferation and EMT through Epigenetically Silencing p27 and Sponging miR-101-3p., Cell. Physiol. Biochem.
  2. Ichigozaki (2016), Serum long non-coding RNA, snoRNA host gene 5 level as a new tumor marker of malignant melanoma., Exp. Dermatol.
  3. Tørring (2014), Long non-coding RNA expression profiles in hereditary haemorrhagic telangiectasia., PLoS ONE
  4. Clark (2012), Genome-wide analysis of long noncoding RNA stability., Genome Res.
  5. Friedel (2009), Conserved principles of mammalian transcriptional regulation revealed by RNA half-life., Nucleic Acids Res.
  6. Makarova (2005), Noncoding RNA of U87 host gene is associated with ribosomes and is relatively resistant to nonsense-mediated decay., Gene


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-TCF24-2:14
4.0 SNHG6:5
4.1 SNHG6:5
5.0 SNHG6:5
5.1 SNHG6:5
5.2 SNHG6:5