Transcript: TEX41:22

Basic information

LNCipedia transcript ID: TEX41:22 
HGNC Gene Symbol: TEX41    
HGNC Full Gene Name: testis expressed 41
Ensembl Gene ID: ENSG00000226674
Ensembl Transcript ID: ENST00000431734
Location (hg19): chr2:145425553-145568842
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 529 bp
Exons: 4
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000431734; ENST00000431734.1; AC074093.1-005; OTTHUMT00000332159.1; NONHSAT074800; ENST00000431734.5
Alternative gene names: ENSG00000226674; AC074093.1; ENSG00000226674.1; OTTHUMG00000153701.1; ENSG00000226674.4; TEX41; ENSG00000226674.8; DKFZp686O1327; LINC00953; ENSG00000226674.9


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -183.8624 non-coding 
CPAT coding probability 22.41% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
TEX41:22 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-ARHGAP15-4:4
3.1 lnc-ARHGAP15-6:4
4.0 TEX41:22
4.1 TEX41:22
5.0 TEX41:22
5.1 TEX41:22
5.2 TEX41:22