Transcript: TEX41:61

Basic information

LNCipedia transcript ID: TEX41:61 
HGNC Gene Symbol: TEX41    
HGNC Full Gene Name: testis expressed 41
Ensembl Gene ID: ENSG00000226674
Ensembl Transcript ID: ENST00000596278
Location (hg19): chr2:145780795-145830713
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 669 bp
Exons: 2
Sources: NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: NONHSAT074820; ENST00000596278.1; ENST00000596278.5
Alternative gene names: ENSG00000226674.4; TEX41; ENSG00000226674.8; DKFZp686O1327; LINC00953; ENSG00000226674.9


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -104.4753 non-coding 
CPAT coding probability 11.65% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
TEX41:61 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-ARHGAP15-6:33
4.0 TEX41:61
4.1 TEX41:61
5.0 TEX41:61
5.1 TEX41:61
5.2 TEX41:61