Transcript: THUMPD3-AS1:37

Basic information

LNCipedia transcript ID: THUMPD3-AS1:37 
LNCipedia gene ID: THUMPD3-AS1
Ensembl Gene ID: ENSG00000254485
Ensembl Transcript ID: ENST00000517687
Location (hg19): chr3:9397456-9404662
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 227 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000517687.1; RP11-380O24.1-004; OTTHUMT00000378544.1; NONHSAT087762
Alternative gene names: ENSG00000254485.1; RP11-380O24.1; OTTHUMG00000165687.1; ENSG00000254485.5; ; AC026191.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -92.9321 non-coding 
CPAT coding probability 1.62% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
THUMPD3-AS1:37 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-SRGAP3-1:25
4.0 THUMPD3-AS1:37
4.1 THUMPD3-AS1:37
5.0 THUMPD3-AS1:37
5.1 THUMPD3-AS1:37
5.2 THUMPD3-AS1:37