Transcript: TRAM2-AS1:2

Basic information

LNCipedia transcript ID: TRAM2-AS1:2 
LNCipedia gene ID: TRAM2-AS1
RefSeq ID: NR_103446
Location (hg19): chr6:52442000-52448791
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2558 bp
Exons: 3
Sources: NONCODE v4; Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: NONHSAT113127; NR_103446; NR_103446.1
Alternative gene names: ; TRAM2-AS1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -44.0192 non-coding 
CPAT coding probability 6.08% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
TRAM2-AS1:2 no no no no

Available literature

  1. Liu (2017), CRISPRi-based genome-scale identification of functional long noncoding RNA loci in human cells., Science


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-EFHC1-2:3
4.0 TRAM2-AS1:2
4.1 TRAM2-AS1:2
5.0 TRAM2-AS1:2
5.1 TRAM2-AS1:2
5.2 TRAM2-AS1:2