Transcript: TRAM2-AS1:7

Basic information

LNCipedia transcript ID: TRAM2-AS1:7 
LNCipedia gene ID: TRAM2-AS1
Location (hg19): chr6:52442105-52448783
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2538 bp
Exons: 4
Sources: NONCODE v4
Alternative transcript names: NONHSAT113130
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -44.0192 non-coding 
CPAT coding probability 4.89% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
TRAM2-AS1:7 no no no no

Available literature

  1. Liu (2017), CRISPRi-based genome-scale identification of functional long noncoding RNA loci in human cells., Science


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-EFHC1-2:6
4.0 TRAM2-AS1:7
4.1 TRAM2-AS1:7
5.0 TRAM2-AS1:7
5.1 TRAM2-AS1:7
5.2 TRAM2-AS1:7