Transcript: ZNF582-AS1:16

Basic information

LNCipedia transcript ID: ZNF582-AS1:16 
HGNC Gene Symbol: ZNF582-AS1    
HGNC Full Gene Name: ZNF582 antisense RNA 1 (head to head)
Ensembl Gene ID: ENSG00000267454
Ensembl Transcript ID: ENST00000589888
Location (hg19): chr19:56905087-56910537
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 1274 bp
Exons: 4
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000501792; ENST00000589888.1; ENST00000589888.5
Alternative gene names: ENSG00000245902; AC006116.1; ENSG00000267454.1; ZNF582-AS1; ENSG00000267454.5;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 8.2668 non-coding 
CPAT coding probability 4.98% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
ZNF582-AS1:16 no no no no

Available literature

  1. Strausberg (2002), Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences., Proc. Natl. Acad. Sci. U.S.A.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-ZNF583-1:8
3.1 lnc-ZNF583-1:8
4.0 ZNF582-AS1:16
4.1 ZNF582-AS1:16
5.0 ZNF582-AS1:16
5.1 ZNF582-AS1:16
5.2 ZNF582-AS1:16