Transcript: lnc-FOXO1-2:1

Basic information

LNCipedia transcript ID: lnc-FOXO1-2:1 
LNCipedia gene ID: lnc-FOXO1-2
Location (hg19): chr13:40918094-40924440
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 444 bp
Exons: 2
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015
Alternative transcript names: ENST00000400432; ENST00000400432.3; RP11-172E9.2-001; OTTHUMT00000044628.1; NONHSAT033328
Alternative gene names: ENSG00000230058; RP11-172E9.2; ENSG00000230058.1; OTTHUMG00000016771.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -176.7914 non-coding 
CPAT coding probability 1.49% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-FOXO1-2:1 no no no no

Available literature

  1. Jeong (2016), Long noncoding RNA linc00598 regulates CCND2 transcription and modulates the G1 checkpoint., Sci Rep
  2. Qiao (2003), Identification of a novel fusion gene, TTL, fused to ETV6 in acute lymphoblastic leukemia with t(12;13)(p13;q14), and its implication in leukemogenesis., Leukemia


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-FOXO1-2:1
3.1 lnc-FOXO1-2:1
4.0 lnc-FOXO1-2:1
4.1 lnc-FOXO1-2:1
5.0 lnc-FOXO1-2:1
5.1 lnc-CCDC169-53:29
5.2 lnc-FOXO1-2:1