Transcript: lnc-FOXO1-2:11

Basic information

LNCipedia transcript ID: lnc-FOXO1-2:11 
HGNC Gene Symbol: lnc-FOXO1-2    
HGNC Full Gene Name: long intergenic non-protein coding RNA 598
Ensembl Gene ID: ENSG00000215483
Ensembl Transcript ID: ENST00000542632
Location (hg19): chr13:41025073-41044386
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 1973 bp
Exons: 5
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000542632.5
Alternative gene names: ENSG00000215483.8; LINC00598; ENSG00000215483.9; ENSG00000215483.10


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -85.4397 non-coding 
CPAT coding probability 31.56% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-FOXO1-2:11 yes no no no

Available literature

  1. Jeong (2016), Long noncoding RNA linc00598 regulates CCND2 transcription and modulates the G1 checkpoint., Sci Rep
  2. Qiao (2003), Identification of a novel fusion gene, TTL, fused to ETV6 in acute lymphoblastic leukemia with t(12;13)(p13;q14), and its implication in leukemogenesis., Leukemia


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 lnc-FOXO1-2:11
4.1 lnc-FOXO1-2:11
5.0 lnc-FOXO1-2:11
5.1 lnc-CCDC169-53:12
5.2 lnc-FOXO1-2:11