Transcript: lnc-FOXO1-2:12

Basic information

LNCipedia transcript ID: lnc-FOXO1-2:12 
LNCipedia gene ID: lnc-FOXO1-2
Location (hg19): chr13:41032671-41040785
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 402 bp
Exons: 3
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014
Alternative transcript names: ENST00000542632; ENST00000542632.1; LINC00598-201
Alternative gene names: ENSG00000215483; RP11-350A18.1; ENSG00000215483.4; LINC00598; OTTHUMG00000016772.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -186.3835 non-coding 
CPAT coding probability 33.45% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-FOXO1-2:12 no no no no

Available literature

  1. Jeong (2016), Long noncoding RNA linc00598 regulates CCND2 transcription and modulates the G1 checkpoint., Sci Rep
  2. Qiao (2003), Identification of a novel fusion gene, TTL, fused to ETV6 in acute lymphoblastic leukemia with t(12;13)(p13;q14), and its implication in leukemogenesis., Leukemia


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-FOXO1-1:2
3.1 lnc-FOXO1-1:2
4.0 lnc-FOXO1-2:12
4.1 lnc-FOXO1-2:12
5.0 lnc-FOXO1-2:12
5.1 lnc-CCDC169-53:13
5.2 lnc-FOXO1-2:12