Transcript: lnc-FOXO1-2:21

Basic information

LNCipedia transcript ID: lnc-FOXO1-2:21 
LNCipedia gene ID: lnc-FOXO1-2
Location (hg19): chr13:40653240-40951443
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 4140 bp
Exons: 8
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000230058.1|MICT00000093287.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -103.9104 non-coding 
CPAT coding probability 4.75% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-FOXO1-2:21 no no no no

Available literature

  1. Jeong (2016), Long noncoding RNA linc00598 regulates CCND2 transcription and modulates the G1 checkpoint., Sci Rep
  2. Qiao (2003), Identification of a novel fusion gene, TTL, fused to ETV6 in acute lymphoblastic leukemia with t(12;13)(p13;q14), and its implication in leukemogenesis., Leukemia


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-FOXO1-2:21
5.0 lnc-FOXO1-2:21
5.1 lnc-CCDC169-53:18
5.2 lnc-FOXO1-2:21