Transcript: lnc-PTGFR-1:14

Basic information

LNCipedia transcript ID: lnc-PTGFR-1:14 
LNCipedia gene ID: lnc-PTGFR-1
RefSeq ID: NR_027310
Location (hg19): chr1:78695283-78835149
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 1193 bp
Exons: 6
Sources: Refseq - NCBI Annotation Release 106
Alternative transcript names: NR_027310.2
Alternative gene names: MGC27382


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -10.4792 non-coding 
CPAT coding probability 22.14% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PTGFR-1:14 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
5.0 lnc-GIPC2-4:8
5.1 lnc-GIPC2-4:8
5.2 lnc-PTGFR-1:14