Transcript: lnc-PTGFR-1:5

Basic information

LNCipedia transcript ID: lnc-PTGFR-1:5 
LNCipedia gene ID: lnc-PTGFR-1
Ensembl Gene ID: ENSG00000237413
Ensembl Transcript ID: ENST00000436742
Location (hg19): chr1:78695283-78759574
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1993 bp
Exons: 6
Sources: Broad Institute; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00000048; ENST00000436742.1; RP11-183M13.1-002; OTTHUMT00000098556.1; NONHSAT004073; ENST00000436742.5
Alternative gene names: XLOC_000264; linc-PTGFR; ENSG00000237413.1; RP11-183M13.1; OTTHUMG00000041107.1; ENSG00000237413.5; MGC27382; AC096531.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -1.3515 non-coding 
CPAT coding probability 63.96% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-PTGFR-1:5 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-PTGFR-1:5
3.1 lnc-PTGFR-1:5
4.0 lnc-PTGFR-1:5
4.1 lnc-PTGFR-1:5
5.0 lnc-PTGFR-1:5
5.1 lnc-GIPC2-4:5
5.2 lnc-PTGFR-1:5