Transcript: lnc-SLC39A11-10:32

Basic information

LNCipedia transcript ID: lnc-SLC39A11-10:32 
HGNC Gene Symbol: lnc-SLC39A11-10    
HGNC Full Gene Name: SOX9 antisense RNA 1
Ensembl Gene ID: ENSG00000234899
Ensembl Transcript ID: ENST00000443037
Location (hg19): chr17:70106319-70106865
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 394 bp
Exons: 2
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000443037; ENST00000443037.1; AC005152.2-009; OTTHUMT00000389030.1; NONHSAT055667
Alternative gene names: ENSG00000234899; AC005152.2; ENSG00000234899.2; OTTHUMG00000132234.3; ENSG00000234899.5; SOX9-AS1; ENSG00000234899.9; FLJ37644


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -226.932 non-coding 
CPAT coding probability 8.70% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SLC39A11-10:32 no no no no

Available literature

  1. Barter (2017), The long non-coding RNA <i>ROCR</i> contributes to SOX9 expression and chondrogenic differentiation of human mesenchymal stem cells., Development
  2. Su (2014), Comprehensive analysis of long non-coding RNAs in human breast cancer clinical subtypes., Oncotarget


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-SLC39A11-4:8
3.1 lnc-SLC39A11-2:8
4.0 SOX9-AS1:22
4.1 SOX9-AS1:22
5.0 SOX9-AS1:22
5.1 lnc-GRB2-56:32
5.2 lnc-SLC39A11-10:32