Gene: lnc-SLC39A11-10
Basic information
HGNC Gene Symbol:
SOX9-AS1
?
HGNC Full Gene Name:
SOX9 antisense RNA 1
Location (hg19): chr17:70017992-70233344
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA_gene
Transcripts: 54
Transcripts
| Transcript ID | Location (hg19) | Length |
|---|---|---|
| lnc-SLC39A11-10:1 | chr17:70216087-70233344 | 1563 bp |
| lnc-SLC39A11-10:10 | chr17:70076079-70116934 | 1739 bp |
| lnc-SLC39A11-10:11 | chr17:70067005-70116933 | 3386 bp |
| lnc-SLC39A11-10:12 | chr17:70067005-70116933 | 840 bp |
| lnc-SLC39A11-10:13 | chr17:70076079-70116933 | 1738 bp |
| lnc-SLC39A11-10:14 | chr17:70077104-70116933 | 769 bp |
| lnc-SLC39A11-10:15 | chr17:70067196-70116929 | 447 bp |
| lnc-SLC39A11-10:16 | chr17:70072255-70116918 | 961 bp |
| lnc-SLC39A11-10:17 | chr17:70067005-70115688 | 2987 bp |
| lnc-SLC39A11-10:18 | chr17:70067005-70115688 | 3057 bp |
| lnc-SLC39A11-10:19 | chr17:70067183-70115688 | 394 bp |
| lnc-SLC39A11-10:2 | chr17:70217271-70217977 | 465 bp |
| lnc-SLC39A11-10:20 | chr17:70067184-70115688 | 567 bp |
| lnc-SLC39A11-10:21 | chr17:70077104-70115688 | 873 bp |
| lnc-SLC39A11-10:22 | chr17:70086896-70115688 | 484 bp |
| lnc-SLC39A11-10:23 | chr17:70086896-70115664 | 460 bp |
| lnc-SLC39A11-10:24 | chr17:70067183-70115634 | 340 bp |
| lnc-SLC39A11-10:25 | chr17:70077329-70115599 | 503 bp |
| lnc-SLC39A11-10:26 | chr17:70067190-70115591 | 467 bp |
| lnc-SLC39A11-10:27 | chr17:70067184-70115589 | 468 bp |
| lnc-SLC39A11-10:28 | chr17:70067190-70114439 | 510 bp |
| lnc-SLC39A11-10:29 | chr17:70067184-70112157 | 3032 bp |
| lnc-SLC39A11-10:3 | chr17:70137527-70216859 | 577 bp |
| lnc-SLC39A11-10:30 | chr17:70067183-70112157 | 3033 bp |
| lnc-SLC39A11-10:31 | chr17:70036855-70107844 | 821 bp |
| lnc-SLC39A11-10:32 | chr17:70106319-70106865 | 394 bp |
| lnc-SLC39A11-10:33 | chr17:70086962-70106689 | 443 bp |
| lnc-SLC39A11-10:34 | chr17:70086960-70106689 | 445 bp |
| lnc-SLC39A11-10:35 | chr17:70100994-70106620 | 483 bp |
| lnc-SLC39A11-10:36 | chr17:70078053-70085261 | 435 bp |
| lnc-SLC39A11-10:37 | chr17:70078062-70085261 | 426 bp |
| lnc-SLC39A11-10:38 | chr17:70072627-70081642 | 1001 bp |
| lnc-SLC39A11-10:39 | chr17:70072247-70081230 | 972 bp |
| lnc-SLC39A11-10:4 | chr17:70127916-70173125 | 298 bp |
| lnc-SLC39A11-10:40 | chr17:70067190-70080222 | 480 bp |
| lnc-SLC39A11-10:41 | chr17:70036788-70053875 | 576 bp |
| lnc-SLC39A11-10:42 | chr17:70030248-70053875 | 582 bp |
| lnc-SLC39A11-10:43 | chr17:70033455-70053875 | 650 bp |
| lnc-SLC39A11-10:44 | chr17:70036788-70053875 | 576 bp |
| lnc-SLC39A11-10:45 | chr17:70030248-70053871 | 578 bp |
| lnc-SLC39A11-10:46 | chr17:70033455-70053860 | 635 bp |
| lnc-SLC39A11-10:47 | chr17:70036950-70042488 | 961 bp |
| lnc-SLC39A11-10:48 | chr17:70027567-70036353 | 5836 bp |
| lnc-SLC39A11-10:49 | chr17:70017994-70033517 | 886 bp |
| lnc-SLC39A11-10:5 | chr17:70168853-70173113 | 247 bp |
| lnc-SLC39A11-10:50 | chr17:70022039-70032010 | 2051 bp |
| lnc-SLC39A11-10:51 | chr17:70017992-70030233 | 323 bp |
| lnc-SLC39A11-10:52 | chr17:70017992-70022138 | 381 bp |
| lnc-SLC39A11-10:53 | chr17:70017992-70022120 | 363 bp |
| lnc-SLC39A11-10:54 | chr17:70017992-70022103 | 346 bp |
| lnc-SLC39A11-10:6 | chr17:70163528-70173110 | 218 bp |
| lnc-SLC39A11-10:7 | chr17:70036873-70169724 | 733 bp |
| lnc-SLC39A11-10:8 | chr17:70086600-70137921 | 742 bp |
| lnc-SLC39A11-10:9 | chr17:70067196-70116946 | 520 bp |
Locus conservation
| Locus conservation? |  |
 |
 |
 |
|---|---|---|---|---|
| lnc-SLC39A11-10 | no | no | no | no |
Available literature
- Barter (2017), The long non-coding RNA <i>ROCR</i> contributes to SOX9 expression and chondrogenic differentiation of human mesenchymal stem cells., Development
- Su (2014), Comprehensive analysis of long non-coding RNAs in human breast cancer clinical subtypes., Oncotarget