Transcript: lnc-SLC39A11-10:34

Basic information

LNCipedia transcript ID: lnc-SLC39A11-10:34 
LNCipedia gene ID: lnc-SLC39A11-10
Location (hg19): chr17:70086960-70106689
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 445 bp
Exons: 2
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012
Alternative transcript names: ENST00000529096; ENST00000529096.1; AC005152.2-008; OTTHUMT00000389029.1
Alternative gene names: ENSG00000234899; AC005152.2; ENSG00000234899.2; OTTHUMG00000132234.3; FLJ37644


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -283.728 non-coding 
CPAT coding probability 10.29% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SLC39A11-10:34 no no no no

Available literature

  1. Barter (2017), The long non-coding RNA <i>ROCR</i> contributes to SOX9 expression and chondrogenic differentiation of human mesenchymal stem cells., Development
  2. Su (2014), Comprehensive analysis of long non-coding RNAs in human breast cancer clinical subtypes., Oncotarget


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-SLC39A11-4:10
3.1 lnc-SLC39A11-2:9
4.0 SOX9-AS1:24
4.1 SOX9-AS1:24
5.0 SOX9-AS1:24
5.1 lnc-GRB2-56:34
5.2 lnc-SLC39A11-10:34