Transcript: lnc-SLC39A11-10:42

Basic information

LNCipedia transcript ID: lnc-SLC39A11-10:42 
LNCipedia gene ID: lnc-SLC39A11-10
RefSeq ID: NR_110877
Location (hg19): chr17:70030248-70053875
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 582 bp
Exons: 3
Sources: Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: NR_110877; NR_110877.1
Alternative gene names: FLJ37644; LOC102723517


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -102.2601 non-coding 
CPAT coding probability 0.73% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SLC39A11-10:42 no no no no

Available literature

  1. Barter (2017), The long non-coding RNA <i>ROCR</i> contributes to SOX9 expression and chondrogenic differentiation of human mesenchymal stem cells., Development
  2. Su (2014), Comprehensive analysis of long non-coding RNAs in human breast cancer clinical subtypes., Oncotarget


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-SLC39A11-2:25
4.0 SOX9-AS1:32
4.1 SOX9-AS1:32
5.0 SOX9-AS1:32
5.1 lnc-GRB2-56:42
5.2 lnc-SLC39A11-10:42