Transcript: lnc-SLC39A11-10:48

Basic information

LNCipedia transcript ID: lnc-SLC39A11-10:48 
LNCipedia gene ID: lnc-SLC39A11-10
Location (hg19): chr17:70027567-70036353
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 5836 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00025747; NONHSAT055643
Alternative gene names: XLOC_012564; linc-ABCA5-7; FLJ37644


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -3.833 non-coding 
CPAT coding probability 1.23% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SLC39A11-10:48 no no no no

Available literature

  1. Barter (2017), The long non-coding RNA <i>ROCR</i> contributes to SOX9 expression and chondrogenic differentiation of human mesenchymal stem cells., Development
  2. Su (2014), Comprehensive analysis of long non-coding RNAs in human breast cancer clinical subtypes., Oncotarget


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-SLC39A11-5:4
3.1 lnc-SLC39A11-3:4
4.0 SOX9-AS1:36
4.1 SOX9-AS1:36
5.0 SOX9-AS1:36
5.1 lnc-GRB2-56:48
5.2 lnc-SLC39A11-10:48