Transcript: lnc-SLC39A11-10:49

Basic information

LNCipedia transcript ID: lnc-SLC39A11-10:49 
LNCipedia gene ID: lnc-SLC39A11-10
Location (hg19): chr17:70017994-70033517
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 886 bp
Exons: 5
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00026151; NONHSAT055638
Alternative gene names: XLOC_012564; linc-ABCA5-7; FLJ37644


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -183.5326 non-coding 
CPAT coding probability 2.15% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SLC39A11-10:49 no no no no

Available literature

  1. Barter (2017), The long non-coding RNA <i>ROCR</i> contributes to SOX9 expression and chondrogenic differentiation of human mesenchymal stem cells., Development
  2. Su (2014), Comprehensive analysis of long non-coding RNAs in human breast cancer clinical subtypes., Oncotarget


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-SLC39A11-5:5
3.1 lnc-SLC39A11-3:5
4.0 SOX9-AS1:37
4.1 SOX9-AS1:37
5.0 SOX9-AS1:37
5.1 lnc-GRB2-56:49
5.2 lnc-SLC39A11-10:49