Transcript: lnc-SNRPN-8:129

Basic information

LNCipedia transcript ID: lnc-SNRPN-8:129 
LNCipedia gene ID: lnc-SNRPN-8
Ensembl Gene ID: ENSG00000261069
Ensembl Transcript ID: ENST00000567527
Location (hg19): chr15:25332808-25334043
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1236 bp
Exons: 1
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000567527.1; RP11-701H24.4-001; OTTHUMT00000434199.1; NONHSAT041038
Alternative gene names: ENSG00000261069.1; RP11-701H24.4; OTTHUMG00000176878.1; ENSG00000261069.2; SNORD116-20; ENSG00000261069.3; AC124312.3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 16.58 non-coding 
CPAT coding probability 2.79% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SNRPN-8:129 no no no no

Available literature

  1. Qi (2017), Long non-coding RNA SNHG14 promotes microglia activation by regulating miR-145-5p/PLA2G4A in cerebral infarction., Neuroscience
  2. Kanduri (2016), Long noncoding RNAs: Lessons from genomic imprinting., Biochim. Biophys. Acta
  3. Wang (2015), Identification of lncRNA-associated competing triplets reveals global patterns and prognostic markers for cancer., Nucleic Acids Res.
  4. Zhao (2015), Identification of cancer-related lncRNAs through integrating genome, regulome and transcriptome features., Mol Biosyst
  5. Ding (2014), Expression and clinical significance of the long non-coding RNA PVT1 in human gastric cancer., Onco Targets Ther
  6. Murrell (2014), Cross-talk between imprinted loci in Prader-Willi syndrome., Nat. Genet.
  7. Stelzer (2014), The noncoding RNA IPW regulates the imprinted DLK1-DIO3 locus in an induced pluripotent stem cell model of Prader-Willi syndrome., Nat. Genet.
  8. Powell (2013), A Prader-Willi locus lncRNA cloud modulates diurnal genes and energy expenditure., Hum. Mol. Genet.
  9. Clark (2012), Genome-wide analysis of long noncoding RNA stability., Genome Res.
  10. Vitali (2010), Long nuclear-retained non-coding RNAs and allele-specific higher-order chromatin organization at imprinted snoRNA gene arrays., J. Cell. Sci.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-SNURF-2:1
4.0 lnc-SNURF-1:73
4.1 lnc-SNURF-1:73
5.0 lnc-SNURF-1:73
5.1 lnc-SNRPN-8:44
5.2 lnc-SNRPN-8:129

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