Transcript: lnc-SNRPN-8:88

Basic information

LNCipedia transcript ID: lnc-SNRPN-8:88 
LNCipedia gene ID: lnc-SNRPN-8
Location (hg19): chr15:25224704-25266501
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 2696 bp
Exons: 11
Sources: Gencode v13; Ensembl release 68 - Jul 2012
Alternative transcript names: ENST00000551631.1; SNHG14-017; OTTHUMT00000408231.1
Alternative gene names: ENSG00000224078.4; SNHG14; OTTHUMG00000056661.4


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -89.0618 non-coding 
CPAT coding probability 1.66% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SNRPN-8:88 no no no no

Available literature

  1. Qi (2017), Long non-coding RNA SNHG14 promotes microglia activation by regulating miR-145-5p/PLA2G4A in cerebral infarction., Neuroscience
  2. Kanduri (2016), Long noncoding RNAs: Lessons from genomic imprinting., Biochim. Biophys. Acta
  3. Wang (2015), Identification of lncRNA-associated competing triplets reveals global patterns and prognostic markers for cancer., Nucleic Acids Res.
  4. Zhao (2015), Identification of cancer-related lncRNAs through integrating genome, regulome and transcriptome features., Mol Biosyst
  5. Ding (2014), Expression and clinical significance of the long non-coding RNA PVT1 in human gastric cancer., Onco Targets Ther
  6. Murrell (2014), Cross-talk between imprinted loci in Prader-Willi syndrome., Nat. Genet.
  7. Stelzer (2014), The noncoding RNA IPW regulates the imprinted DLK1-DIO3 locus in an induced pluripotent stem cell model of Prader-Willi syndrome., Nat. Genet.
  8. Powell (2013), A Prader-Willi locus lncRNA cloud modulates diurnal genes and energy expenditure., Hum. Mol. Genet.
  9. Clark (2012), Genome-wide analysis of long noncoding RNA stability., Genome Res.
  10. Vitali (2010), Long nuclear-retained non-coding RNAs and allele-specific higher-order chromatin organization at imprinted snoRNA gene arrays., J. Cell. Sci.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-SNURF-1:1
4.0 lnc-SNURF-1:1
4.1 lnc-SNURF-1:1
5.0 lnc-SNURF-1:1
5.1 lnc-SNRPN-8:2
5.2 lnc-SNRPN-8:88

loading