Transcript: lnc-TMEM65-1:1

Basic information

LNCipedia transcript ID: lnc-TMEM65-1:1 
LNCipedia gene ID: lnc-TMEM65-1
Ensembl Gene ID: ENSG00000214803
Ensembl Transcript ID: ENST00000523703
Location (hg19): chr8:125204912-125259639
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1195 bp
Exons: 3
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000523703; ENST00000523703.1; RP11-37N22.1-001; OTTHUMT00000381461.1; NONHSAT128577
Alternative gene names: ENSG00000214803; RP11-37N22.1; ENSG00000214803.3; OTTHUMG00000165018.1; AC090921.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 22.6222 non-coding 
CPAT coding probability 4.88% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TMEM65-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-TMEM65-1:1
3.1 lnc-TMEM65-1:1
4.0 lnc-TMEM65-1:1
4.1 lnc-TMEM65-1:1
5.0 lnc-TMEM65-1:1
5.1 lnc-WASHC5-22:1
5.2 lnc-TMEM65-1:1